Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs11716628 chr3:35876491 A/G 7.19E-5 98 14.67 20.37 9.7 KM Plot
SKCM rs11739847 chr5:609661 G/A 0 100 15.13 13.4 6.33 KM Plot
SKCM rs11750321 chr5:599196 C/T 0 99 15.13 12 6.33 KM Plot
SKCM rs1178438 chr16:1833829 T/G 9.27E-5 96 10.82 15.73 14.8 KM Plot
SKCM rs11855797 chr15:41434679 C/T 9.61E-5 97 12.9 19.43 15.63 KM Plot
SKCM rs11880261 chr19:40788641 C/T 3.89E-5 101 15.63 14.9 11.73 KM Plot
SKCM rs11889833 chr2:65749387 G/C 5.12E-7 100 15.3 13.9 8.8 KM Plot
SKCM rs11892591 chr2:65747892 T/C 5.12E-7 100 15.3 13.9 8.8 KM Plot
SKCM rs11908965 chr21:32252137 A/C 0 101 6.17 13.37 15.6 KM Plot
SKCM rs1190924 chr14:100911406 T/C 0.000106 100 12.27 16.35 15.13 KM Plot
SKCM rs11954077 chr5:1639658 A/G 3.91E-5 98 15.3 13.63 9 KM Plot
SKCM rs11985755 chr8:143441568 A/G 7.21E-5 100 15.38 15.57 10.87 KM Plot
SKCM rs11994696 chr8:143422260 G/A 8.52E-5 98 15.63 15.13 10.87 KM Plot
SKCM rs1201468 chr14:100898976 G/A 0.000106 100 12.27 16.35 15.13 KM Plot
SKCM rs1203548 chr14:100913666 A/T 0.000106 100 12.27 16.35 15.13 KM Plot